BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002B03LP1|AL424903
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1532 1549 0.0
>3x_Contig1532
Length = 7463
Score = 1549 bits (776), Expect = 0.0
Identities = 831/849 (97%), Gaps = 5/849 (0%)
Strand = Plus / Minus
Query: 1 tgattaatggtaagattttttcaatctakatctagcacctctaccaccgaatttctttgg 60
||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 849 tgattaacggtaagatttttggaatctagatctagcacctctaccaccgaatttctttgg 790
Query: 61 ttctggtcttctagaatcagcgatcaacaaggttctgtcgtaagaagtgaaagccttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ttctggtcttctagaatcagcgatcaacaaggttctgtcgtaagaagtgaaagccttctt 730
Query: 121 caattcgttcttggattgttcatcgacgaacttttgktggtaagcaaccaaacccttagc 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 729 caattcgttcttggattgttcatcgacgaacttttggtggtaagcaaccaaacccttagc 670
Query: 181 gatag-ttgtctgatagcatagacttgagagacagtgaccaccaaccggtaaccattaac 239
||||| ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 669 gatagcttgtctgatagcatagacttgagagac-gtgaccacca-ccggtaacc-ttaac 613
Query: 240 atctgatgtcgatgttggcgaacttgtccaaaccaaccaataacaatggttcgtaaacct 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 -tctgatgtcgatgttggcgaacttgtccaaaccaaccaataacaatggttcgtaaacct 554
Query: 300 tgaatctcaagatttctggttgcaccaaggtgattggagaaccgttaaccttgatcaaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgaatctcaagatttctggttgcaccaaggtgattggagaaccgttaaccttgatcaaac 494
Query: 360 ccttaccggccttaacgtgggcaacggcagtagcagacttcttcttaccaaaagtctata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccttaccggccttaacgtgggcaacggcagtagcagacttcttcttaccaaaagtctata 434
Query: 420 ggaaarataatgaggtaatagtttcaaaactgttagtaaaatacgtttttccaatgacat 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggaaaaataatgaggtaatagtttcaaaactgttagtaaaatacgtttttccaatgacat 374
Query: 480 tggaactgggaaagcccttgactaaraacataggtgatgccagavaggtgggtatttgar 539
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 373 tggaactgggaaagcccttgactaaaaacataggtgatgccagaaaggtgggtatttgaa 314
Query: 540 ccgtttcatacacgtcgataacatctttggaggtcatttgcttcttagttataaatngcc 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 313 ccgtttcatacacgtcgataacatctttggaggtcatttgcttcttagttataaatagcc 254
Query: 600 tgartatccttactggtgttactggtggtgaaatgattctgtcagagtggttttggatag 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgaatatccttactggtgttactggtggtgaaatgattctgtcagagtggttttggatag 194
Query: 660 cccacattatacaaatkgtatattacggtgattccccttaatcaaatcttgtctggtatc 719
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cccacattatacaaatggtatattacggtgattccccttaatcaaatcttgtctggtatc 134
Query: 720 tttttaccacatcctgtttccttcggtgattctcattatatggtaggttcaatccacatt 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tttttaccacatcctgtttccttcggtgattctcattatatggtaggttcaatccacatt 74
Query: 780 taatttgttcatgctatcacgagcaaatcggtcattgcttagcgatakaacttgaaacac 839
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 73 taatttgttcatgctatcacgagcaaatcggtcattgcttagcgatagaacttgaaacac 14
Query: 840 acacgctct 848
|||||||||
Sbjct: 13 acacgctct 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6893
Number of Sequences: 1807
Number of extensions: 6893
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.3 bits)